PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140365.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27264.6 Da    PI: 5.8159
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl+e++s
  XP_009140365.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFEFCS 59
                    69**********************************************96 PP

2K-box51.35.1e-18941702197
           K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++L kei    +++R++ Ge+L+ L+++eLqqLe++Le +l+++ ++K+e ++++i++lq+k  +l +enk+Lr+ 
  XP_009140365.1  94 NSRLSKEIADKSHQLRQMRGEELQGLNIEELQQLEKALEAGLTRVIETKSEKIMSEISDLQRKGMKLMDENKRLRQH 170
                     5789999999999*************************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.291161IPR002100Transcription factor, MADS-box
CDDcd002651.45E-39277No hitNo description
PRINTSPR004043.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-31376IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.38187180IPR002487Transcription factor, K-box
PfamPF014869.0E-1793169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLFEFCSS  60
SMREVLERHN LQSKNLEKLD QPSLELQLVE NSDNSRLSKE IADKSHQLRQ MRGEELQGLN  120
IEELQQLEKA LEAGLTRVIE TKSEKIMSEI SDLQRKGMKL MDENKRLRQH GTQLTEENER  180
LGKQIYNNMH ERYGGVESEK TAVYEEGQSS ESITNAGNST GAPVDSESSD TSLRLGLPYG  240
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J9e-19369268Myocyte-specific enhancer factor 2A
3p57_I9e-19369268Myocyte-specific enhancer factor 2A
3p57_D9e-19369268Myocyte-specific enhancer factor 2A
3p57_C9e-19369268Myocyte-specific enhancer factor 2A
3p57_B9e-19369268Myocyte-specific enhancer factor 2A
3p57_A9e-19369268Myocyte-specific enhancer factor 2A
3kov_J9e-19369268Myocyte-specific enhancer factor 2A
3kov_I9e-19369268Myocyte-specific enhancer factor 2A
3kov_B9e-19369268Myocyte-specific enhancer factor 2A
3kov_A9e-19369268Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.175890.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6416750.0DQ641675.1 Brassica rapa subsp. campestris cultivar Jangmi short vegetative phase protein (SVP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140365.11e-176PREDICTED: MADS-box protein SVP-like
SwissprotQ9FVC11e-159SVP_ARATH; MADS-box protein SVP
TrEMBLA0SMV61e-176A0SMV6_BRARO; Short vegetative phase protein
STRINGBra030228.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-149MIKC_MADS family protein